PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G16180.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 715aa MW: 76193.8 Da PI: 6.8345

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G16180.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	233	253	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G++C+F Hg OGLUM03G16180.2 233 PCLYYAR-GFCKNGSTCRFVHG 253 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE 60 LALLPPPQAA SSSPTVPAAH SPFLLSRQNS GRCPAPSPSS WAQAQPFSRS NSMGNGGAAD 120 EMVGAGEELM SPLNGGGGAA ANAPPFFPRG GDALLDDFEL QEQLAFLHDG AGGVNPGHAL 180 QAFDGAECRS PGPGESGGML PYCLAWANGG PGHRRSASVN ELCLGGDGFG WKPCLYYARG 240 FCKNGSTCRF VHGGLSDDAA MDAATAEQQQ CQDFLLRSKS QRLGPAAFPF TPTGSLPASP 300 SATSKCLSLL LQQQQQHNDN QRAAAAALML AGGDEAHKFM GRPRLDRVDF ASMMNPGSRQ 360 IYLTFPADST FREEDVSNYF RYIMRCCNDA SSFFHGGLGR TRSDWHFCIA VLGNAPRCSI 420 YGPVHDVRIP YQQKRMFGFV TFVYPETVKL ILAKGNPHFI CDARVLVKPY KEKGKVPDKY 480 RKQQQGDFCC MSPTGLDARD PFDFHQLGAR MLQHSNSANE LMLRRKLEEQ QQAAELQQAI 540 DLHSRRLIGL QLLDLKSSAA VHAAETTTMS LPTPITNAFT SGQLGATTIV ESPPSSTGQL 600 MASCGSPSEG KVVNGGNKAD SAGEVTRNAD SDQSGEHNLP DSPFASSTKS TAFSTATAAT 660 AIGSEGDFTT GSSCNIGGSA VGGANPLRPP TLDIPSPRTC FFPMPRLSEH GAIGM

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE  60
LALLPPPQAA SSSPTVPAAH SPFLLSRQNS GRCPAPSPSS WAQAQPFSRS NSMGNGGAAD  120
EMVGAGEELM SPLNGGGGAA ANAPPFFPRG GDALLDDFEL QEQLAFLHDG AGGVNPGHAL  180
QAFDGAECRS PGPGESGGML PYCLAWANGG PGHRRSASVN ELCLGGDGFG WKPCLYYARG  240
FCKNGSTCRF VHGGLSDDAA MDAATAEQQQ CQDFLLRSKS QRLGPAAFPF TPTGSLPASP  300
SATSKCLSLL LQQQQQHNDN QRAAAAALML AGGDEAHKFM GRPRLDRVDF ASMMNPGSRQ  360
IYLTFPADST FREEDVSNYF RYIMRCCNDA SSFFHGGLGR TRSDWHFCIA VLGNAPRCSI  420
YGPVHDVRIP YQQKRMFGFV TFVYPETVKL ILAKGNPHFI CDARVLVKPY KEKGKVPDKY  480
RKQQQGDFCC MSPTGLDARD PFDFHQLGAR MLQHSNSANE LMLRRKLEEQ QQAAELQQAI  540
DLHSRRLIGL QLLDLKSSAA VHAAETTTMS LPTPITNAFT SGQLGATTIV ESPPSSTGQL  600
MASCGSPSEG KVVNGGNKAD SAGEVTRNAD SDQSGEHNLP DSPFASSTKS TAFSTATAAT  660
AIGSEGDFTT GSSCNIGGSA VGGANPLRPP TLDIPSPRTC FFPMPRLSEH GAIGM

Link Out ? help Back to Top
Ensembl	OGLUM03G16180.2