PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G15150.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 425aa MW: 45348.8 Da PI: 8.4287

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G15150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.4	1.3e-11	133	189	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g krk + g ++ +++Aa+a++ a++k++g OGLUM03G15150.1 133 SCYRGVTRHRWTGRYEAHLWDnTCRrDGqKRKGRQ-GGYDIEDKAARAYDLAALKYWG 189 79*****************66666667778877.6699989***********98 PP
2	AP2	50.2	6.5e-16	232	284	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++g+ OGLUM03G15150.1 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 284 57**************988532...5***********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MSPPTNGAIS LTFPPMGPLP ADALIYPFDG LSYDDFVLPV AAAPQHPLPV AVADPAPLLL 60 LPPPSSCTCN GASSGMGAVA PRTLALGATT DGSVMTPTSW GSDGGGGGSS SARAVRSPSP 120 VLPLVQGTGQ RTSCYRGVTR HRWTGRYEAH LWDNTCRRDG QKRKGRQGGY DIEDKAARAY 180 DLAALKYWGA SATTNFPKES YVKEIEEMQK MSKQELVASL RRKSSGFSRG ASIYRGVTRH 240 HQHGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDVAALK FRGANAVTNF EPSRYNLEAI 300 SQSDLPISVS GRRHNSSSNS NNPAPEAGGQ ITLMSSPPIS QQSSSAPPYL LHNLLQFQPC 360 DPPYAPPPPP PPPPQALPLP GSYNFAEPVG FYWPYGDGEE QKVQLNSNMV GMASGGFLHL 420 ANAAN

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MSPPTNGAIS LTFPPMGPLP ADALIYPFDG LSYDDFVLPV AAAPQHPLPV AVADPAPLLL  60
LPPPSSCTCN GASSGMGAVA PRTLALGATT DGSVMTPTSW GSDGGGGGSS SARAVRSPSP  120
VLPLVQGTGQ RTSCYRGVTR HRWTGRYEAH LWDNTCRRDG QKRKGRQGGY DIEDKAARAY  180
DLAALKYWGA SATTNFPKES YVKEIEEMQK MSKQELVASL RRKSSGFSRG ASIYRGVTRH  240
HQHGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDVAALK FRGANAVTNF EPSRYNLEAI  300
SQSDLPISVS GRRHNSSSNS NNPAPEAGGQ ITLMSSPPIS QQSSSAPPYL LHNLLQFQPC  360
DPPYAPPPPP PPPPQALPLP GSYNFAEPVG FYWPYGDGEE QKVQLNSNMV GMASGGFLHL  420
ANAAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	4e-85	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G15150.1