PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G14370.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 445aa MW: 47396.9 Da PI: 5.9244

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G14370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.9	3.5e-13	372	395	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + r G C+yG+rC+FaHg OGLUM03G14370.1 372 KTELCNKWER-GACPYGARCRFAHG 395 8*******.***********9 PP
2	zf-CCCH	18.5	3.6e-06	408	434	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p OGLUM03G14370.1 408 YKTLPCQMFAAASGCPYGHRCHFRHSP 434 9***********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEGELSFVSP ARSSCFSFEG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPGRA 60 SSPLQKQIPD CRDAGDFSPL TWASTLEKPL ESPSSCISDG RGGGFGSPTS AFPPEKLLIS 120 PPTCASDNRG VGNVGGFPSL PWASSLERLL TSPSSCVSDS RGVGNADGFP SLPWASSLEK 180 PLTSPSSCVS DGRSGGYSSP LGASAERERE VREAEMLLRA IAERYDDCFL RLRDAAAELS 240 DLHRERLRLA AENLHLSLLL EELESEQRKQ ASAMAPPKLE EDEAAQGGAP KSISIRSPGY 300 LSQKPPQGQA RPQRLRVRAS QAMEISHPNC LIFVMGNQCS PKEAAAAGDE EDEEDKGGGE 360 VEVEAYRQGA AKTELCNKWE RGACPYGARC RFAHGLQELR PVIRHPRYKT LPCQMFAAAS 420 GCPYGHRCHF RHSPLRAAAA ESFCY

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEGELSFVSP ARSSCFSFEG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPGRA  60
SSPLQKQIPD CRDAGDFSPL TWASTLEKPL ESPSSCISDG RGGGFGSPTS AFPPEKLLIS  120
PPTCASDNRG VGNVGGFPSL PWASSLERLL TSPSSCVSDS RGVGNADGFP SLPWASSLEK  180
PLTSPSSCVS DGRSGGYSSP LGASAERERE VREAEMLLRA IAERYDDCFL RLRDAAAELS  240
DLHRERLRLA AENLHLSLLL EELESEQRKQ ASAMAPPKLE EDEAAQGGAP KSISIRSPGY  300
LSQKPPQGQA RPQRLRVRAS QAMEISHPNC LIFVMGNQCS PKEAAAAGDE EDEEDKGGGE  360
VEVEAYRQGA AKTELCNKWE RGACPYGARC RFAHGLQELR PVIRHPRYKT LPCQMFAAAS  420
GCPYGHRCHF RHSPLRAAAA ESFCY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	3e-32	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G14370.1