PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G10940.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 676aa MW: 75671.3 Da PI: 6.0941

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G10940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.8	2.8e-26	70	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++ r+ tr+gCka+l++kk +kw+vtk+ + HnH OGLUM03G10940.1 70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEnlhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHG 160 6*****************************************999998899999********************************5 PP
2	FAR1	86.7	3.4e-27	207	300	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + +k ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+l OGLUM03G10940.1 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLL 300 9****************************************9999999999999*********************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MEGVVTSSVG EPNQDNEPRD SSIELPRVIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM 60 EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV 120 DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN 180 PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL 300 SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSTGIQC NSTDSLTVLY NHLCQEAIKF 360 AKEGSVTEEI YHVAMNALKE AAEKVFEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK 420 TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINESNWRF CSRFPYLITI 480 YQWILIDCYL PLECSPDIFP FSWNADGQYR LLAAPIEAVP ISYRPAEPIQ QPHGSFPNSG 540 PLPGFLPKLY KRGKGPNSLV HATALACGAR VVPPEEAASL IKAIESKIRS GGATIAKLPS 600 SSLTPLIPEV ASMSSSSEDD EENDHSEPLM ASVEHNCHDQ SSEEMKLEAD PPSELETEAE 660 NCSAQPENEN NGPTHC

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MEGVVTSSVG EPNQDNEPRD SSIELPRVIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL  300
SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSTGIQC NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVFEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK  420
TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINESNWRF CSRFPYLITI  480
YQWILIDCYL PLECSPDIFP FSWNADGQYR LLAAPIEAVP ISYRPAEPIQ QPHGSFPNSG  540
PLPGFLPKLY KRGKGPNSLV HATALACGAR VVPPEEAASL IKAIESKIRS GGATIAKLPS  600
SSLTPLIPEV ASMSSSSEDD EENDHSEPLM ASVEHNCHDQ SSEEMKLEAD PPSELETEAE  660
NCSAQPENEN NGPTHC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-30	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G10940.1