PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G10340.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 275aa    MW: 28243.7 Da    PI: 8.1837
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G10340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.28.8e-41371371100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ae
  OGLUM03G10340.1  37 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 130
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l +l+++
  OGLUM03G10340.1 131 LTYLQAH 137
                      **99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MSSGGGASSA LGGGGGGGGS GGGGGGPSGG GGGGGGPCGA CKFLRRKCVS GCIFAPYFDS  60
EQGAAHFAAV HKVFGASNVS KLLLQIPAHK RPDAVVTICY EAQARLRDPV YGCVAHIFAL  120
QQQVVNLQAE LTYLQAHLAT LELPSPPPLM PAPPQMPMPA PFSISDLPSS TSVPTTVDLS  180
ALFDPPPQPQ WASPLQQQQQ HHHQHHHHQQ QQHQLRQPSY ATLARAPSGM TAAAESSGGG  240
GGGGGGDLQA LARELLDRHR SAVKLEQPPP PHSRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.15e-70LBD family protein