PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G09850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 25119.6 Da PI: 10.8362 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 28 | 72 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd+ll ++v++ Gg++W Ia ++ gRt+k+c++rw+++l OGLUM03G09850.1 28 GWSKEEDKLLRELVRKQGGKDWGVIATAFP-GRTDKSCRLRWRQHL 72 5*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 80 | 124 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++ Ed ++v++++ +G++ W+tIa+ ++ gR+++ +k+rw+++l OGLUM03G09850.1 80 LPFSAGEDRKIVELHRVHGNR-WATIAAFLP-GRSDNAIKNRWNTHL 124 589999***************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MALEGAAGGG GVGGGGGPPG QEAGKKVGWS KEEDKLLREL VRKQGGKDWG VIATAFPGRT 60 DKSCRLRWRQ HLDPSVDVAL PFSAGEDRKI VELHRVHGNR WATIAAFLPG RSDNAIKNRW 120 NTHLRKRHAQ DVQQRPSGGL ALGLGGGGGA GQAAGGKLTP VCLQLFPPTQ APPMGRTYRG 180 RQEALCRSSS SSSPWLPDNA SAAAAMDVGN EAVRALPELR LSPAAVVFDA MPLQAIRM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 4e-34 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G09850.1 |