PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 640aa MW: 68398.1 Da PI: 6.7756

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	291	347	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g rk + g ++t+++Aa+a++ a++k++g OGLUM03G09570.1 291 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 347 78*****************88888885446656.7799************97 PP
2	AP2	46.8	7.1e-15	390	441	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OGLUM03G09570.1 390 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 441 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAIHHHHHH HPPAAAAAAG AMSSPPDSAT 60 TCNFLFSPPA AQMVAPSPGY YYVGGAYGDG TSTAGVYYSH LPVMPIKSDG SLCIMEVGMM 120 PSSSPKLEDF LGCGNGSGHD PATYYSQGQE AEDASRAAYQ HHQLVPYNYQ PLTEAEMLQE 180 AAAAPMEDAM AAAKNFLVTS YGACYGNQEM PQPLSLSMSP GSQSSSCVSA APQQHQQMAV 240 VAAAAAAGDG QGSNSNDGGE QRVGKKRGTG KGGQKQPVHR KSIDTFGQRT SQYRGVTRHR 300 WTGRYEAHLW DNSCKKDGQT RKGRQGGYDT EDKAARAYDL AALKYWGLST HINFPLENYR 360 DEIEEMERMT RQEYVAHLRR RSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 420 TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI TRYDVDKIME SSSLLPGEAA RKVKAIEAAP 480 DHVPIGRELG ATEEASAATV TGTDWRMVLH GSQQQQAAAC TEATADLQKG FMGDAHSALH 540 GIVGFDVESA AADEIDVPGG KISGINFSNS SSLVTSLSNS REGSPERLGL AMLYAKHHPT 600 AVSLAAMNPW MPTPAPAAAH VMRPPSAIAH LPVFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAIHHHHHH HPPAAAAAAG AMSSPPDSAT  60
TCNFLFSPPA AQMVAPSPGY YYVGGAYGDG TSTAGVYYSH LPVMPIKSDG SLCIMEVGMM  120
PSSSPKLEDF LGCGNGSGHD PATYYSQGQE AEDASRAAYQ HHQLVPYNYQ PLTEAEMLQE  180
AAAAPMEDAM AAAKNFLVTS YGACYGNQEM PQPLSLSMSP GSQSSSCVSA APQQHQQMAV  240
VAAAAAAGDG QGSNSNDGGE QRVGKKRGTG KGGQKQPVHR KSIDTFGQRT SQYRGVTRHR  300
WTGRYEAHLW DNSCKKDGQT RKGRQGGYDT EDKAARAYDL AALKYWGLST HINFPLENYR  360
DEIEEMERMT RQEYVAHLRR RSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI TRYDVDKIME SSSLLPGEAA RKVKAIEAAP  480
DHVPIGRELG ATEEASAATV TGTDWRMVLH GSQQQQAAAC TEATADLQKG FMGDAHSALH  540
GIVGFDVESA AADEIDVPGG KISGINFSNS SSLVTSLSNS REGSPERLGL AMLYAKHHPT  600
AVSLAAMNPW MPTPAPAAAH VMRPPSAIAH LPVFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-103	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G09570.1