PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G05600.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 545aa MW: 57968.4 Da PI: 7.6086

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G05600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.7	1e-11	252	308	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g OGLUM03G05600.1 252 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308 789****************333.44555535555.779999************98 PP
2	AP2	46.3	1e-14	353	402	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OGLUM03G05600.1 353 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD 60 APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGSSSSSSCG HADQIKYHHV HDVQAFSTPS 120 FYGHGGSGVG IDINMNAPPA GCTGVLPDHR PPPPQQDHIF LPPHGQYFLG PPNPMAPAPM 180 YNAGGGGGGV VDGSMSISGI KSWLRQAMYV PERSAAALSL SVPAAPPSEA PLPPAAMPVV 240 RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD 300 LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH 360 QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ISKYDVKRIC 420 SSTHLIGGDL ACRRSPTRML PPDAPAGAAG VDVVVAPGDH QQISAGGGGA SDNSDTASDG 480 HRGAHLLHGL QYAHAMKFEA GESSGGGGDG ATTNWMAAAA AAARPVAGIP TTVHHQLPVF 540 ALWND

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGSSSSSSCG HADQIKYHHV HDVQAFSTPS  120
FYGHGGSGVG IDINMNAPPA GCTGVLPDHR PPPPQQDHIF LPPHGQYFLG PPNPMAPAPM  180
YNAGGGGGGV VDGSMSISGI KSWLRQAMYV PERSAAALSL SVPAAPPSEA PLPPAAMPVV  240
RKPAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD  300
LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ISKYDVKRIC  420
SSTHLIGGDL ACRRSPTRML PPDAPAGAAG VDVVVAPGDH QQISAGGGGA SDNSDTASDG  480
HRGAHLLHGL QYAHAMKFEA GESSGGGGDG ATTNWMAAAA AAARPVAGIP TTVHHQLPVF  540
ALWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-113	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G05600.1