PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G05490.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 318aa    MW: 33456.5 Da    PI: 6.3088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G05490.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-202776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  OGLUM03G05490.1 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                     69****999.**********9...337*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRAAS AAAAHQRLRW LPASAAAAAA RGGAAAVPAY  120
GLLNLNAQHN VHVIHQRLQE LKNSSSSPTK PPPRTPTRAN PPPPPLPTSS PCSTVTNSVG  180
SAALPPPMSC FQALEQAMAA TAAMESAPCD DDAAVVGFGA DKPQLDLKEF LQQIGVLKAD  240
DDGATGKNGA VHGDDGELAD AFGFGGSGEF DWDALAADMS DIAGGHGGAL GANGGFQMDD  300
LHEVEQFGGC MPIPIWDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-42ERF family protein