PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G03940.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 424aa MW: 46167.2 Da PI: 10.448

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G03940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	65.8	5.8e-21	219	279	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+ne ++ d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg OGLUM03G03940.1 219 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 279 689*****...*999**9..566...8899****************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MRPPGTALGF GLISGAGSRR VTEPKPPNFI SKKKKRKRKK QKRKEEKRSS SPRLCPPSRR 60 FLVSFSPSNL PPLCRFRVSA LQLLPNSGPR FARSRPPMVS GVAHRPDDDG GRAASTFQRP 120 PQPAGARPSL ATPPPSGGAQ SASTSGGSAG SPSSRSEQHV PAAAGMAAGA AAASTPISEN 180 TFLRLNDLDI HGDDAPSSQA PTSKKKKRGA RAVGPDKGGR GLRQFSMKVC EKVESKGRTT 240 YNEQQYDEKN IRRRVYDALN VLMAMEIISK DKKEIQWKGL PRTSINDIED LQTELVGLKS 300 RIEKKNTYLQ ELQDQLIQRN EQLYGSGNIP SGGVALPFIL VQTRPHATVE VEISEDMQLV 360 HFDFNSTPFE LHDDSFVLKA MSSCGEEQID GIHDLISNGG ESSSMPNIYR QQTFTQAAVV 420 DPGS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MRPPGTALGF GLISGAGSRR VTEPKPPNFI SKKKKRKRKK QKRKEEKRSS SPRLCPPSRR  60
FLVSFSPSNL PPLCRFRVSA LQLLPNSGPR FARSRPPMVS GVAHRPDDDG GRAASTFQRP  120
PQPAGARPSL ATPPPSGGAQ SASTSGGSAG SPSSRSEQHV PAAAGMAAGA AAASTPISEN  180
TFLRLNDLDI HGDDAPSSQA PTSKKKKRGA RAVGPDKGGR GLRQFSMKVC EKVESKGRTT  240
YNEQQYDEKN IRRRVYDALN VLMAMEIISK DKKEIQWKGL PRTSINDIED LQTELVGLKS  300
RIEKKNTYLQ ELQDQLIQRN EQLYGSGNIP SGGVALPFIL VQTRPHATVE VEISEDMQLV  360
HFDFNSTPFE LHDDSFVLKA MSSCGEEQID GIHDLISNGG ESSSMPNIYR QQTFTQAAVV  420
DPGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	37	KKKKRK
2	32	38	KKKKRKR
3	32	40	KKKKRKRKK
4	32	48	KKKKRKRKKQKRKEEKR
5	33	39	KKKKRKR
6	33	49	KKKKRKRKKQKRKEEKR
7	34	40	KKKKRKR
8	34	50	KKKKRKRKKQKRKEEKR
9	34	39	KKRKRK
10	34	41	KKRKRKKQ
11	35	43	KKKKRKRKK
12	35	51	KKKKRKRKKQKRKEEKR
13	36	52	KKKKRKRKKQKRKEEKR
14	36	40	RKRKK
15	37	53	KKKKRKRKKQKRKEEKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-112	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G03940.1