PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G03710.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 286aa    MW: 29724.2 Da    PI: 6.4971
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G03710.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-37798191
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                     +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp  +r++a+ ++ yeA+ar+rdP+yG+v++i++lqqq++ ++
  OGLUM03G03710.1  7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVAHIFALQQQVRIVH 98
                     7*************************89***********************************************************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD  60
RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVRIVHSI DVSLVGVAGL LILVSRRVFE  120
QVMTLQAQLA SLKAAAAQGI HHQDVGATTK GGYMSAAATA ADDQLGYGGY DQWCGSNGGG  180
APAASQPGAY SSNGGAGHGH DSITALLAAG SDYMQHSLYH AFEHSEGAGA VDDGHAAAAA  240
FEAAESSSCG MAASFAADES VWRSSSSGYQ DCEDLQSVAY AYLNRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-56LBD family protein