PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G02310.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 404aa MW: 42443.4 Da PI: 8.0681

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G02310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	8e-32	21	74	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR OGLUM03G02310.1 21 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 74 8****************************************************5 PP
2	Myb_DNA-binding	51.4	2.4e-16	22	73	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT++++ +v+a+++lGg t+k++ + mg g+t ++ks++q+y+ OGLUM03G02310.1 22 RLRWTPDLHHCFVHAIHKLGGQdkaTPKRVLQLMGvGGLTISHVKSHLQMYR 73 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MVGGGRERNG GVRQYNRSKV PRLRWTPDLH HCFVHAIHKL GGQDKATPKR VLQLMGVGGL 60 TISHVKSHLQ MYRNMRNDLG MQGIQVQQVD QEHTYGGGVE VWTDMQQCDH DECDVPCCSC 120 HSPKPRKEPL LHLQLKSSGM NIDEPGTRAR IAAPNVRSCR DDAAASATET RRRRGGRPEE 180 VDDDANASAS PRISQLQLLH LRGHGIRESD MSPSTSLQCY YVRSQRTTTM PPGAAAAAAG 240 GDGGSQCYAA PRYSSSSKLK FLGFVVTSGP PPPPPPPPRL PPPAACCCGS DDNIPFQVGT 300 FAPHRVAPPT ASCGGGGGGR AEARPSSSYR SVWFEPAAAA AASNNGVAPD GEHDDGCSLS 360 LSLALDTGCG GAGAGAGGSL VTSTTSSSSG SRISLDLSLS TLDS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MVGGGRERNG GVRQYNRSKV PRLRWTPDLH HCFVHAIHKL GGQDKATPKR VLQLMGVGGL  60
TISHVKSHLQ MYRNMRNDLG MQGIQVQQVD QEHTYGGGVE VWTDMQQCDH DECDVPCCSC  120
HSPKPRKEPL LHLQLKSSGM NIDEPGTRAR IAAPNVRSCR DDAAASATET RRRRGGRPEE  180
VDDDANASAS PRISQLQLLH LRGHGIRESD MSPSTSLQCY YVRSQRTTTM PPGAAAAAAG  240
GDGGSQCYAA PRYSSSSKLK FLGFVVTSGP PPPPPPPPRL PPPAACCCGS DDNIPFQVGT  300
FAPHRVAPPT ASCGGGGGGR AEARPSSSYR SVWFEPAAAA AASNNGVAPD GEHDDGCSLS  360
LSLALDTGCG GAGAGAGGSL VTSTTSSSSG SRISLDLSLS TLDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-26	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G02310.1