PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G00950.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 1774aa MW: 195159 Da PI: 5.3473

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G00950.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.7e-06	1754	1774	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G+C+ G++C++ H+ OGLUM03G00950.2 1754 ICK-FHENGYCRKGASCNYLHP 1774 799.9999*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1774 aa Download sequence
MEGAAAAAGG AEMLSPGEAD WPPELRLSPP PPPSAASERE PPPARAAVGM DDSQFLGSII 60 GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC 120 FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS 180 LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV 240 DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS 300 SRKKGRKRRK PNSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH 360 MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL 420 EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP 480 EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG 540 IHKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL 600 KVGDIQEKAK IFQFVRVNDL LNTPEERARR INEVLDVHVD SHMDPDYESD DEFGNKKAVE 660 RSVNWARSDP FVSPVKVKYL NSSQKNGDAT RHLKNLSKQN TERKSGAARN FENSHSPVGM 720 DIPKSGTNVK STRCETTSPS SHGVVSSDME PEKVWHYKDP SGNVQGPFTL VQLSKWTSYF 780 PRDMRVWLTF ESEERSLLLT EVLSKQPKDF GQPASVTTSS KSTVADTGQN RNTEIVDLNK 840 APSPVGYSML NSFETTVQST KHSAPERESV NSLDDRLSHS TDSVPPKDAN ASNSQAMCQI 900 KHSGSLPSPG SPHQRSDLHH DEVQGGRSGE WNNQHNSELW SPSMPQTSSS AHSNVESHHD 960 HYPSWSQVQH DPKNSLQAGS GKDLNSRYDI AQKLPSQRIT RDVPSPVFAW SPSESRTASS 1020 QHEGSCLSST TNLCTHDELH SSIASAKAKS FAPATPVEDR GSSSPSGMLS LSERAPICSP 1080 QSAPSASASD TCKMEENMNQ QKTLEADISN TSVNQSPQSK ILPESSPDNQ DAEHEYRSPP 1140 PISESKELSP QSRTTPGSSP DNQDTEREYP SPPPISGSKE ISPQSRTILE SSPDNQDNGH 1200 EYPSPPPIPE SIELSPHSKA LPESSPDNQD IEPECPSPPQ IPESKELSRQ SKILPESSPG 1260 NQDIEPECPS PPQIPESKEL SQQSKILPES SPDNHDIKCE YSSPTPIPES KELSLQSKIL 1320 PESSSDNQDI KCEDPSPTPI SKSKEVSPQS KILSESYLDN QDVERECLSS ILITESKELA 1380 VDLPGSISLA PEKTASTDVG ENSSLAFIFP KSTLAGDDAL KSVFDMAKAH LECEDSKVKE 1440 ELYVESTVVI RDDMVVNPAS GVESIDMSEN LLESLMEQSC GTFYMDGTTA LEGFLSGSTK 1500 EEPQCSSPIA LSTCSSPIAL SPWGEHGYYQ GDSVGSSLWG VQDDDPIGNI WPLSSQAPAL 1560 QYSSGSTAHF IDEATVTHGN NGVVLSSTPG EEVGLPNSGV CTDWGLVEQV NPEANDASVS 1620 MIDKNSGLVD SQPSANDGSD VGTARNTNHN TNLSLNHETA VPLSRSSGEA SRKHGFITDL 1680 NVATSEEALG NTKNWNPSAG NANRGSQRNH HRDRYSQISE SWLLSSNYSR SRSDGFGTGG 1740 SSRSTPRGQT QRGICKFHEN GYCRKGASCN YLHP

Sequence ? help Back to Top

Protein Sequence Length: 1774 aa Download sequence

MEGAAAAAGG AEMLSPGEAD WPPELRLSPP PPPSAASERE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS  300
SRKKGRKRRK PNSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH  360
MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL  420
EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP  480
EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG  540
IHKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL  600
KVGDIQEKAK IFQFVRVNDL LNTPEERARR INEVLDVHVD SHMDPDYESD DEFGNKKAVE  660
RSVNWARSDP FVSPVKVKYL NSSQKNGDAT RHLKNLSKQN TERKSGAARN FENSHSPVGM  720
DIPKSGTNVK STRCETTSPS SHGVVSSDME PEKVWHYKDP SGNVQGPFTL VQLSKWTSYF  780
PRDMRVWLTF ESEERSLLLT EVLSKQPKDF GQPASVTTSS KSTVADTGQN RNTEIVDLNK  840
APSPVGYSML NSFETTVQST KHSAPERESV NSLDDRLSHS TDSVPPKDAN ASNSQAMCQI  900
KHSGSLPSPG SPHQRSDLHH DEVQGGRSGE WNNQHNSELW SPSMPQTSSS AHSNVESHHD  960
HYPSWSQVQH DPKNSLQAGS GKDLNSRYDI AQKLPSQRIT RDVPSPVFAW SPSESRTASS  1020
QHEGSCLSST TNLCTHDELH SSIASAKAKS FAPATPVEDR GSSSPSGMLS LSERAPICSP  1080
QSAPSASASD TCKMEENMNQ QKTLEADISN TSVNQSPQSK ILPESSPDNQ DAEHEYRSPP  1140
PISESKELSP QSRTTPGSSP DNQDTEREYP SPPPISGSKE ISPQSRTILE SSPDNQDNGH  1200
EYPSPPPIPE SIELSPHSKA LPESSPDNQD IEPECPSPPQ IPESKELSRQ SKILPESSPG  1260
NQDIEPECPS PPQIPESKEL SQQSKILPES SPDNHDIKCE YSSPTPIPES KELSLQSKIL  1320
PESSSDNQDI KCEDPSPTPI SKSKEVSPQS KILSESYLDN QDVERECLSS ILITESKELA  1380
VDLPGSISLA PEKTASTDVG ENSSLAFIFP KSTLAGDDAL KSVFDMAKAH LECEDSKVKE  1440
ELYVESTVVI RDDMVVNPAS GVESIDMSEN LLESLMEQSC GTFYMDGTTA LEGFLSGSTK  1500
EEPQCSSPIA LSTCSSPIAL SPWGEHGYYQ GDSVGSSLWG VQDDDPIGNI WPLSSQAPAL  1560
QYSSGSTAHF IDEATVTHGN NGVVLSSTPG EEVGLPNSGV CTDWGLVEQV NPEANDASVS  1620
MIDKNSGLVD SQPSANDGSD VGTARNTNHN TNLSLNHETA VPLSRSSGEA SRKHGFITDL  1680
NVATSEEALG NTKNWNPSAG NANRGSQRNH HRDRYSQISE SWLLSSNYSR SRSDGFGTGG  1740
SSRSTPRGQT QRGICKFHEN GYCRKGASCN YLHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	310	KRKRNSSRKKGRKRRK
2	296	311	KRKRNSSRKKGRKRRK
3	296	311	RKRNSSRKKGRKRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-167	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G00950.2