PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G00950.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 1801aa MW: 198418 Da PI: 5.3852

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G00950.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	1781	1801	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G+C+ G++C++ H+ OGLUM03G00950.1 1781 ICK-FHENGYCRKGASCNYLHP 1801 799.9999*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1801 aa Download sequence
MEGAAAAAGG AEMLSPGEAD WPPELRLSPP PPPSAASERE PPPARAAVGM DDSQFLGSII 60 GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC 120 FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS 180 LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV 240 DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS 300 SRKKGRKRRK PNSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH 360 MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL 420 EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP 480 EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG 540 IHKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL 600 KVGDIQEKAK IFQFVRVNDW FENEKQKLCH LRDRASETGQ CVEKLQLLNT PEERARRINE 660 VLDVHVDSHM DPDYESDDEF GNKKAVERSV NWARSDPFVS PVKVKYLNSS QKNGDATRHL 720 KNLSKQNTER KSGAARNFEN SHSPVGMDIP KSGTNVKSTR CETTSPSSHG VVSSDMEPEK 780 VWHYKDPSGN VQGPFTLVQL SKWTSYFPRD MRVWLTFESE ERSLLLTEVL SKQPKDFGQP 840 ASVTTSSKST VADTGQNRNT EIVDLNKAPS PVGYSMLNSF ETTVQSTKHS APERESVNSL 900 DDRLSHSTDS VPPKDANASN SQAMCQIKHS GSLPSPGSPH QRSDLHHDEV QGGRSGEWNN 960 QHNSELWSPS MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK 1020 LPSQRITRDV PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP 1080 ATPVEDRGSS SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV 1140 NQSPQSKILP ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP 1200 PISGSKEISP QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP 1260 ECPSPPQIPE SKELSRQSKI LPESSPGNQD IEPECPSPPQ IPESKELSQQ SKILPESSPD 1320 NHDIKCEYSS PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL 1380 SESYLDNQDV ERECLSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST 1440 LAGDDALKSV FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE 1500 SLMEQSCGTF YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS 1560 VGSSLWGVQD DDPIGNIWPL SSQAPALQYS SGSTAHFIDE ATVTHGNNGV VLSSTPGEEV 1620 GLPNSGVCTD WGLVEQVNPE ANDASVSMID KNSGLVDSQP SANDGSDVGT ARNTNHNTNL 1680 SLNHETAVPL SRSSGEASRK HGFITDLNVA TSEEALGNTK NWNPSAGNAN RGSQRNHHRD 1740 RYSQISESWL LSSNYSRSRS DGFGTGGSSR STPRGQTQRG ICKFHENGYC RKGASCNYLH 1800 P

Sequence ? help Back to Top

Protein Sequence Length: 1801 aa Download sequence

MEGAAAAAGG AEMLSPGEAD WPPELRLSPP PPPSAASERE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS  300
SRKKGRKRRK PNSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH  360
MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL  420
EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP  480
EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG  540
IHKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL  600
KVGDIQEKAK IFQFVRVNDW FENEKQKLCH LRDRASETGQ CVEKLQLLNT PEERARRINE  660
VLDVHVDSHM DPDYESDDEF GNKKAVERSV NWARSDPFVS PVKVKYLNSS QKNGDATRHL  720
KNLSKQNTER KSGAARNFEN SHSPVGMDIP KSGTNVKSTR CETTSPSSHG VVSSDMEPEK  780
VWHYKDPSGN VQGPFTLVQL SKWTSYFPRD MRVWLTFESE ERSLLLTEVL SKQPKDFGQP  840
ASVTTSSKST VADTGQNRNT EIVDLNKAPS PVGYSMLNSF ETTVQSTKHS APERESVNSL  900
DDRLSHSTDS VPPKDANASN SQAMCQIKHS GSLPSPGSPH QRSDLHHDEV QGGRSGEWNN  960
QHNSELWSPS MPQTSSSAHS NVESHHDHYP SWSQVQHDPK NSLQAGSGKD LNSRYDIAQK  1020
LPSQRITRDV PSPVFAWSPS ESRTASSQHE GSCLSSTTNL CTHDELHSSI ASAKAKSFAP  1080
ATPVEDRGSS SPSGMLSLSE RAPICSPQSA PSASASDTCK MEENMNQQKT LEADISNTSV  1140
NQSPQSKILP ESSPDNQDAE HEYRSPPPIS ESKELSPQSR TTPGSSPDNQ DTEREYPSPP  1200
PISGSKEISP QSRTILESSP DNQDNGHEYP SPPPIPESIE LSPHSKALPE SSPDNQDIEP  1260
ECPSPPQIPE SKELSRQSKI LPESSPGNQD IEPECPSPPQ IPESKELSQQ SKILPESSPD  1320
NHDIKCEYSS PTPIPESKEL SLQSKILPES SSDNQDIKCE DPSPTPISKS KEVSPQSKIL  1380
SESYLDNQDV ERECLSSILI TESKELAVDL PGSISLAPEK TASTDVGENS SLAFIFPKST  1440
LAGDDALKSV FDMAKAHLEC EDSKVKEELY VESTVVIRDD MVVNPASGVE SIDMSENLLE  1500
SLMEQSCGTF YMDGTTALEG FLSGSTKEEP QCSSPIALST CSSPIALSPW GEHGYYQGDS  1560
VGSSLWGVQD DDPIGNIWPL SSQAPALQYS SGSTAHFIDE ATVTHGNNGV VLSSTPGEEV  1620
GLPNSGVCTD WGLVEQVNPE ANDASVSMID KNSGLVDSQP SANDGSDVGT ARNTNHNTNL  1680
SLNHETAVPL SRSSGEASRK HGFITDLNVA TSEEALGNTK NWNPSAGNAN RGSQRNHHRD  1740
RYSQISESWL LSSNYSRSRS DGFGTGGSSR STPRGQTQRG ICKFHENGYC RKGASCNYLH  1800
P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	310	KRKRNSSRKKGRKRRK
2	296	311	KRKRNSSRKKGRKRRK
3	296	311	RKRNSSRKKGRKRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G00950.1