PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G39500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 647aa MW: 71399.1 Da PI: 5.3817

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G39500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	113	134	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f++ G C GdrC F H OGLUM02G39500.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134 69****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MDSAVRPPVD DEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN 60 CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK 120 GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF 180 DKPKDSAHNG KTAQKQNLTN RAGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV 240 EMGEFVREPS AGSDVLTGGA DDNAEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH 300 RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSGRH NVYPEDERHD 360 RHRRRGEEQA SHDGVSSSRL HGRIRLPAET TFDRLGLQHE KERDRGPRAR LSPPSQTDLR 420 GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL 480 TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR GEHSGGDEEG 540 SQNDFRNIED DIVGMNTEGN GEEAFQPEDD VVYGDSLSPA DDIAAEAADD ASRELEEQQD 600 VETAEEYDYE MDDVNAAEEN DYQEYEDEDD DLEDDDDFAR KVGVMIT

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MDSAVRPPVD DEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN  60
CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK  120
GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF  180
DKPKDSAHNG KTAQKQNLTN RAGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV  240
EMGEFVREPS AGSDVLTGGA DDNAEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH  300
RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSGRH NVYPEDERHD  360
RHRRRGEEQA SHDGVSSSRL HGRIRLPAET TFDRLGLQHE KERDRGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL  480
TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR GEHSGGDEEG  540
SQNDFRNIED DIVGMNTEGN GEEAFQPEDD VVYGDSLSPA DDIAAEAADD ASRELEEQQD  600
VETAEEYDYE MDDVNAAEEN DYQEYEDEDD DLEDDDDFAR KVGVMIT

Link Out ? help Back to Top
Ensembl	OGLUM02G39500.1