PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G38740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 22457.6 Da PI: 7.9346 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.5e-38 | 21 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn +kll++lp +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l+a+ OGLUM02G38740.1 21 PCGACKFLRRRCVPECVFAPYFSSEQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQ 114 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 l +++++ OGLUM02G38740.1 115 LMQARAQ 121 *999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MAGATAAGAA AAAAGTGAGS PCGACKFLRR RCVPECVFAP YFSSEQGAAR FAAIHKVFGA 60 SNASKLLSHL PVADRCEAVV TITYEAQARL RDPVYGCVAQ IFALQQQVAI LQAQLMQARA 120 QLACGIQSSS HSPVSWPDSG SISALLRQDM ARRPPGGALD DCFGGGGALL PELMAAGFKD 180 DVAAVQMQQH CSKAVDAGEL QYLAQAMMRS TSNYSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-45 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM02G38740.1 |