PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G35650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 163aa    MW: 17585.4 Da    PI: 11.0822
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G35650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA40.68.3e-1323463558
        CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58
                       pylheSRh+hA++R+Rg+gGrF
  OGLUM02G35650.1 23 SVPYLHESRHRHAMKRARGTGGRF 46
                     579********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MACISYPYND SGSGVWASYS SRSVPYLHES RHRHAMKRAR GTGGRFLNTK QLQLQQQSHT  60
TSTKTTTDSQ NSSGSVHLRL GGGAIGDQTP FPFKAMDSQA NIKRAAASAS TFTVTSAAQK  120
DDAFFDRHGH HLSSFSGHFG QASAQGGVGR MHNGSQQRVP AMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13140RHRHAMKRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.26e-09NF-YA family protein