PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G35200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 726aa MW: 76346.6 Da PI: 5.2383

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G35200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.2e-30	390	449	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ OGLUM02G35200.1 390 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 449 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MTWDNRIKDE SSLLIALLIR LRHPDIDLDA SGEVALGFKT IINQKEARSM SSKKKRAAAI 60 DLSLEAERRR PEEEGGGGDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE EKVVEVVVDQ 120 GEDGSNEEIK YRTQQGDMME EDKQPAAAAN VDDDGSDSDG AGASAEEKHM VTEATGGEGD 180 DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA AYQQQPAAAD 240 EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDDGK EDLGLSLSLG 300 ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG GAAPAAGELA 360 AAGGIASQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP 420 GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTTSSSSVS 480 DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGGMQHLNL FGNSPSSSSL LAPQAPGSSK 540 YPWSPNHPPL AGAGGNKRPF WSAGGDGDKP APAALAENVG AVMSDPNKFS AAIAAAINNF 600 MGKDGESSSG KSSTFAWTRS MDCTATPASV PAPARPRREP GCPCLSPFSL SLGLLLSSSS 660 SSSPTPSRPR AHRRRNPADL LRSRIGRSPP GSRFPKKWQE VQGQGGMWLV SLDPHRIPSL 720 RTAGKQ

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MTWDNRIKDE SSLLIALLIR LRHPDIDLDA SGEVALGFKT IINQKEARSM SSKKKRAAAI  60
DLSLEAERRR PEEEGGGGDR EASDGAAAAA EEDGDVKQRE GPKEETGGEE EKVVEVVVDQ  120
GEDGSNEEIK YRTQQGDMME EDKQPAAAAN VDDDGSDSDG AGASAEEKHM VTEATGGEGD  180
DGGDSRTPMA QDELSEMQEE MERMKEENRM LRRVVDKTVR DYYELQMKLA AYQQQPAAAD  240
EPKETEVFLS LGATAAASAG CGGGFPEAKS KEQAAWRRRS VGSDDSDDGK EDLGLSLSLG  300
ASSSYDDDQK AVEARPHDVD GAAAAAMIGG DGSRPAPRGY ALLESSKVQG GAAPAAGELA  360
AAGGIASQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP  420
GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTTSSSSVS  480
DASAAPSSSY LSPYLLNSAS PLLMPGATGG GGGGMQHLNL FGNSPSSSSL LAPQAPGSSK  540
YPWSPNHPPL AGAGGNKRPF WSAGGDGDKP APAALAENVG AVMSDPNKFS AAIAAAINNF  600
MGKDGESSSG KSSTFAWTRS MDCTATPASV PAPARPRREP GCPCLSPFSL SLGLLLSSSS  660
SSSPTPSRPR AHRRRNPADL LRSRIGRSPP GSRFPKKWQE VQGQGGMWLV SLDPHRIPSL  720
RTAGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-49	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G35200.1