PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G32560.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 503aa MW: 55951.7 Da PI: 8.7318

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G32560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	38	2.7e-12	94	135	12	58
E2F_TDP 12 kflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 +f++l+++ + + + l+++a++L v +rRRiYDi+NVLe++++ OGLUM02G32560.1 94 SFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGV 135 79***9999********.....**************986 PP
2	E2F_TDP	72.9	3.4e-23	260	337	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse..dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e + +k+RR+YDi+NVL++ln i+k ++k+++rw g OGLUM02G32560.1 260 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghAENTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 337 79*********************************9955679*******************99*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MATAVVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG 60 LLCSKWGSLV HLGDSWILAF WFPVLTEFFC AFSSFVALYN RDDVESIGLD DAARRLGVER 120 RRIYDIVNVL ESVGVSSFFL RLSWTGFLFF LARFDSDICF RFICEKILVR KAKNRYSWIG 180 FGGVPMALRE LKERALREKS GLAPLPVEEP SAAIMSDDED EDKMGDADGD TESEKLSQPV 240 DNPSDNKPGA PRCRLRSDHR KEKSLGLLTQ NFVKLFLTME VDTISLDEAA KLLLGEGHAE 300 NTKVRRLYDI ANVLSSLNFI DKIQQADSRK PAFRWLGSAG KPKAENGVTI AVPPPGKTIS 360 NKRAFGTELT NIDINRSRLD STIPKKAKLT QSGGEILKNC KLSVQKQLGQ GSKGGFVYGP 420 FHPAGARKQE LDNGNKGHTD NVQNWESLAA SFRPQYQNQA LGDLFAHYVE AWKSWYSEFA 480 QGSSMMQQHF GMPVINQFLY SNH

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MATAVVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG  60
LLCSKWGSLV HLGDSWILAF WFPVLTEFFC AFSSFVALYN RDDVESIGLD DAARRLGVER  120
RRIYDIVNVL ESVGVSSFFL RLSWTGFLFF LARFDSDICF RFICEKILVR KAKNRYSWIG  180
FGGVPMALRE LKERALREKS GLAPLPVEEP SAAIMSDDED EDKMGDADGD TESEKLSQPV  240
DNPSDNKPGA PRCRLRSDHR KEKSLGLLTQ NFVKLFLTME VDTISLDEAA KLLLGEGHAE  300
NTKVRRLYDI ANVLSSLNFI DKIQQADSRK PAFRWLGSAG KPKAENGVTI AVPPPGKTIS  360
NKRAFGTELT NIDINRSRLD STIPKKAKLT QSGGEILKNC KLSVQKQLGQ GSKGGFVYGP  420
FHPAGARKQE LDNGNKGHTD NVQNWESLAA SFRPQYQNQA LGDLFAHYVE AWKSWYSEFA  480
QGSSMMQQHF GMPVINQFLY SNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	8e-86	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G32560.1