PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G32010.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 452aa MW: 49230.9 Da PI: 6.2643

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G32010.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.7e-08	17	58	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ OGLUM02G32010.1 17 ARACDSCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 58 578*****************************6567777776 PP
2	CCT	69.6	7.8e-24	399	442	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OGLUM02G32010.1 399 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRP 442 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSCSSEKAAG AVGGKAARAC DSCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERL 60 RLRVSSPPPL TARASVEEEA AAAVGTTTTT TSKREGGVTP AWSKRKARTR RPQVKSVGQL 120 LSRRLVVPEM AVESSDERKA DEDGAHEELE GQLLYRVPVF DPSLAEFCSP PPIDDAAAAS 180 SSCFKEDAAD GAVEDAKYPA AAASSPVQQL PDSFVNFEPT DAELREFAAD MEALLGQGLD 240 DSNELQDSFY METLGLITPP VEESGRVKME LDGGVASNSR VSLPSCRAHP KPEDVESADV 300 LDIDFNCTSS DEQKSSASNG AAADSQFFHR SLDLRLNYEA IIESWGNSPW TDGRPPHGQL 360 DDFWPNDHHY SGLWAAGGGG HGAEVGMMTV RPRMDGPGRE ARVTRYREKR RTRLFSKKIR 420 YEVRKLNAEK RPRMKGRFVK RPSAAAAPCA VT

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSCSSEKAAG AVGGKAARAC DSCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERL  60
RLRVSSPPPL TARASVEEEA AAAVGTTTTT TSKREGGVTP AWSKRKARTR RPQVKSVGQL  120
LSRRLVVPEM AVESSDERKA DEDGAHEELE GQLLYRVPVF DPSLAEFCSP PPIDDAAAAS  180
SSCFKEDAAD GAVEDAKYPA AAASSPVQQL PDSFVNFEPT DAELREFAAD MEALLGQGLD  240
DSNELQDSFY METLGLITPP VEESGRVKME LDGGVASNSR VSLPSCRAHP KPEDVESADV  300
LDIDFNCTSS DEQKSSASNG AAADSQFFHR SLDLRLNYEA IIESWGNSPW TDGRPPHGQL  360
DDFWPNDHHY SGLWAAGGGG HGAEVGMMTV RPRMDGPGRE ARVTRYREKR RTRLFSKKIR  420
YEVRKLNAEK RPRMKGRFVK RPSAAAAPCA VT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	426	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-54	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G32010.1