PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G30150.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 372aa    MW: 39867.1 Da    PI: 8.045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G30150.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.3e-09174221455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  OGLUM02G30150.1 174 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 221
                      8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LGSMCYGSLG  60
GEPPLAPEAS NGSGSSGGGG SFRKRRPDDA KGESNSICKR QRGKQQQQQQ PCHPDQMAAA  120
VGKGRPERAR PGAKKKAEVA SPKDSPATSA STVTAGQKTD YIHVRARRGQ ATDSHSLAER  180
VRRERISERM RYLQELVPGC NKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVNF  240
NIVEDLFGRQ LSQAACNPAA LPAMALPMAQ VEPSCLQMSP LQQMQTSAGS SGYGLEMVVS  300
NQYSPPGGPM SVPAGASVEP CLNVNGAAGW DIGSHGLFSG FDAPFQSVQS DCLLDNLKME  360
MSRSKKASDL RI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.18e-36bHLH family protein