PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G29590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 600aa MW: 61957.5 Da PI: 6.6285

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G29590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	333	391	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OGLUM02G29590.1 333 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 391 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MIHPLMSSLP PLHLSFLLFF LSFRTYKTAL SILSLSLVSQ QFCPLPLGAR LLAGFTQHYT 60 TTSIIVLLPS RASERERERE RERGGGGGGG QIIMCDYFLQ RMEGEQAAGD LADIVLRAGG 120 AAAAAVAGGG IPSTEWQLPP AEEEEEEPGF FPLPPSSSDG SGMSGADAFG DPFAGLPDPF 180 GGDYPSSSGG AAAAADFFDA VVAKAGFVDV GVLGGGGGGG CDGGGVDGGG GGSSLLGMSK 240 PILPRAAMQL PSVSPRAIRP YPVMAGDTVK LGAPMAGGPC AFDGAAAAGL HMSSSPRGAV 300 GGIKRRKNQA RKVVCIPAPA AAGGRTSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS 360 SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSHHAKN SSSNSSSSGA 420 SSASKNNSSH SGYHHQKPLV KAEPNDQSAA AAAATTAATV PVKEEAAMVG TSSEALAKTT 480 QKSMEDAAAA ASATAAAVEH SDLMQQMFSQ SYRPMIPEAA AGGHHDDFFA DLAELESDPM 540 SLIFSKEYMA TNYKPAGDPA GKEMNAVDKG LDPAYMLDWS STTVVTRAGG SSFMQGEGGL

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MIHPLMSSLP PLHLSFLLFF LSFRTYKTAL SILSLSLVSQ QFCPLPLGAR LLAGFTQHYT  60
TTSIIVLLPS RASERERERE RERGGGGGGG QIIMCDYFLQ RMEGEQAAGD LADIVLRAGG  120
AAAAAVAGGG IPSTEWQLPP AEEEEEEPGF FPLPPSSSDG SGMSGADAFG DPFAGLPDPF  180
GGDYPSSSGG AAAAADFFDA VVAKAGFVDV GVLGGGGGGG CDGGGVDGGG GGSSLLGMSK  240
PILPRAAMQL PSVSPRAIRP YPVMAGDTVK LGAPMAGGPC AFDGAAAAGL HMSSSPRGAV  300
GGIKRRKNQA RKVVCIPAPA AAGGRTSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS  360
SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSHHAKN SSSNSSSSGA  420
SSASKNNSSH SGYHHQKPLV KAEPNDQSAA AAAATTAATV PVKEEAAMVG TSSEALAKTT  480
QKSMEDAAAA ASATAAAVEH SDLMQQMFSQ SYRPMIPEAA AGGHHDDFFA DLAELESDPM  540
SLIFSKEYMA TNYKPAGDPA GKEMNAVDKG LDPAYMLDWS STTVVTRAGG SSFMQGEGGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	9e-66	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G29590.1