PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G28660.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 409aa MW: 43773.7 Da PI: 8.1305

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G28660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.5	3.6e-30	95	186	1	87
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 f+kv tpsdv+k++rlv+pk++ae++ +e++ l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ OGLUM02G28660.1 95 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGiGD 186 89*************************955556888**********************************************944243 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS 60 GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY 120 FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF 180 SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP 240 PATLYEHRLR QGLDFRVFNP AAAMGRQVLL FGSARIPPQA PLLARAPSPL HHHYTLQPSG 300 DGVRAAGSPV VLDSVPVIES PTTAAKRVRL FGVNLDNPHG GGAAAAGESS NHGNALSLQT 360 PAWMRRDPTL RLLELPPHHH HGAESSAASS PSSSSSSKRD AHSALDLDL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS  60
GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY  120
FPLDAAANEK GLLLNFEDRA GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF  180
SRGIGDEAAR HRLFIDWKRR ADTRDPLRLP RGLPLPMPLT SHYAPWGIGG GGGFFVPPSP  240
PATLYEHRLR QGLDFRVFNP AAAMGRQVLL FGSARIPPQA PLLARAPSPL HHHYTLQPSG  300
DGVRAAGSPV VLDSVPVIES PTTAAKRVRL FGVNLDNPHG GGAAAAGESS NHGNALSLQT  360
PAWMRRDPTL RLLELPPHHH HGAESSAASS PSSSSSSKRD AHSALDLDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	3e-65	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G28660.1