PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G28500.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 288aa    MW: 31555.6 Da    PI: 9.4979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G28500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-133781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  OGLUM02G28500.1 37 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVSANQPPPD AAAAAAGSAG EDASKKVRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK  60
KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKNEPGYTI  120
KADSSSMLRN SGMNATVSSW THNSIPPIVA SSMVKEDLGA GAMAPNNFCS SSTEGPARAW  180
QPGEINDQIN QVPSLRHFAQ VYSFLGSVFD PSTSGHLQKL KEMNPIDVET ALLLMRNLSI  240
NLTSPDFEDQ RKLLSSYSTP SDGLELGSTR SSVLADRPLS APFMIKGE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.17e-84MYB_related family protein