PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G27380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 712aa    MW: 73971.8 Da    PI: 6.3129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G27380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.11.6e-863547113374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f+++
  OGLUM02G27380.1 354 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFANF 442
                      7899*************************************************6666553.....444456889******************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   
  OGLUM02G27380.1 443 TATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV--- 533
                      ************98899**********************99976544599****************************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + 
  OGLUM02G27380.1 534 SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GI 619
                      9*********888889********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l+++++ ++v  +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l l+W++ +Lvs+S
  OGLUM02G27380.1 620 DADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALALYWQRGELVSIS 708
                      99*******************988876.....56889********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  OGLUM02G27380.1 709 SWR 711
                      **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPRNSTSTLS  60
SSQGGGGADS TGVAAVSESS AAAAEATKWG APGEHGGGGG GGGKEDWSSG CELPPIPGTL  120
DVGLVGGEGW DTMLGNAAAA AAGQDQSFLN WIIGAAGDLE QPGPPLLDNA GFGIPAVDPL  180
GFSLDHSLSG VASDLSSSGA HTATGGAGGG KASLGFGLFS PEATSLEQPP PPMLFHEGID  240
TKPPLLGAQP PGLLNHYHHQ PPNPAATFFM PHPSFPEHNH QSPLLQPPPK RHHSMPDDIY  300
LARNQLPPAA AAAQGLPFSP LHASVPFQLQ PSPPPTRGAM KTTAAEAAQQ QLLDELAAAA  360
KATEAGNSVG AREILARLNQ QLPPLGKPFL RSASYLREAL LLALADSHHG VSSVTTPLDV  420
ALKLAAYKSF SDLSPVLQFA NFTATQALLD EIGGTATSCI HVIDFDLGVG GQWASFLQEL  480
AHRRAAGGVT LPLLKLTAFV STASHHPLEL HLTQDNLSQF AADLGIPFEF NAVSLDAFNP  540
GELISSTGDE VVAVSLPVGC SARAPPLPAI LRLVKQLSPK IVVAIDHGAD RADLSFSQHF  600
LNCFQSCVFL LDSLDAAGID ADSACKIERF LIQPRVHDMV LGRHKVHKAI AWRSVFAAAG  660
FKPVPPSNLA EAQADCLLKR VQVRGFHVEK RGAALALYWQ RGELVSISSW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-93GRAS family protein