PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G27370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 709aa    MW: 74260.2 Da    PI: 5.9887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G27370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.28.3e-843517083374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f+++
  OGLUM02G27370.1 351 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTNF 439
                      7899*************************************************..444444555555...499********************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T++ s +s++  el+ t+++L++fA+el++pfefn++   
  OGLUM02G27370.1 440 TATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRIPFEFNAV--- 530
                      ***********998899************************966444489****************************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl++++ ++ l+dsl+a  + 
  OGLUM02G27370.1 531 SLDAFNPVELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GI 616
                      889998888866666*********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  OGLUM02G27370.1 617 DADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 705
                      99*******************999888.....78899********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  OGLUM02G27370.1 706 SWR 708
                      **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MRAALFGAER SGVVDHGGGD KEELFWPAGK GGLVVVEPRS VLDCTRSPSP PYSTSTLSSS  60
LGGGSADSTG VAAVSESSTA AAGATKWGAP GEHGGGGKEE WGGGCELPPI PGALDVGLVG  120
GEGWDATATL GNAAGPDQSF LNWIIGAAGD LEQPGPPLPV LQQPLIDNAG FGIPAVDTMG  180
FSLDHPLSGV ASDLSSSGAH TATGGGGKAS LGFGLFSPEA TSLEQPPPSM LFHEGIDTKP  240
PLLGAQPQFL LNHYQPQPPN PAAALFMPLP PFPEHNHQSP HLQPPLKRHH AIPDDLYLAR  300
NQQQSSAVAP GLAYSPPLHG PAPFQLHPSP PPIRGAMKST AAEAAQQQLL DELAAAAKAT  360
EAGNSVGARE ILARLNQQLP QLGKPFLRSA SYLKEALLLA LADSHHGSSG VTSPLDVALK  420
LAAYKSFSDL SPVLQFTNFT ATQALLDEIG GMATSCIHVI DFDLGVGGQW ASFLQELAHR  480
RGAGGMALPL LKLTAFMSTA SHHPLELHLT QDNLSQFAAE LRIPFEFNAV SLDAFNPVEL  540
ISSSGDEVVA VSLPVGCSAR APPLPAILRL VKQLCPKVVV AIDHGGDRAD LPFSQHFLNC  600
FQSCVFLLDS LDAAGIDADS ACKIERFLIQ PRVEDAVIGR HKAQKAIAWR SVFAATGFKP  660
VQPSNLAEAQ ADCLLKRVQV RGFHVEKRGA ALTLYWQRGE LVSISSWRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194104GGGGKEEWGGG
295105GGGGKEEWGGG
396106GGGGKEEWGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-94GRAS family protein