PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G26330.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 268aa MW: 28191.4 Da PI: 5.3295

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G26330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.1e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ OGLUM02G26330.1 4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43 7*****************************7677777776 PP
2	zf-B_box	23.9	8.3e-08	62	94	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C + H OGLUM02G26330.1 62 APLCDICQEKRGFLFCKEDRAILCRECDVPVHT 94 689*************************99884 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP SVSGRSPTST 60 TAPLCDICQE KRGFLFCKED RAILCRECDV PVHTASELTM RHSRYLLTGV RLSSEPAASP 120 APPSEEENSS SFCCSADDAV PAPAAPATSH GGSSGSSSIS EYLTTLPGWH VEDFLVDDAT 180 AEAAATAAAA AGISANGPCQ GVTRIGGLQE STGYPAWMAQ QQLCCDGLVA GDASPASRER 240 WVPQIYADQL AAGSKRSRTS TASSYSYW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	6e-36	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G26330.1