PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G24660.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 293aa MW: 32517.1 Da PI: 5.0632

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G24660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.1	4.6e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv++v+q+G g+W+++a+ g++R++k+c++rw +yl OGLUM02G24660.1 17 KGPWTAQEDRLLVEYVRQHGEGRWNSVAKITGLKRSGKSCRLRWVNYL 64 79********************************************97 PP
2	Myb_DNA-binding	50.9	3.6e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ OGLUM02G24660.1 70 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 8999****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MEGQQFAWGR EEGGWRKGPW TAQEDRLLVE YVRQHGEGRW NSVAKITGLK RSGKSCRLRW 60 VNYLRPDLKR GKITPQEESV ILELHALWGN RWSTIARSLP GRTDNEIKNY WRTHFKKGKP 120 SKNIERARAR FLKQRREMQQ QSQLMQSGQQ QQQQQQLGQD DDATSAVVDD NLAEVAPPAA 180 ASLTHDGELQ IMQEMAPDMD DLLYYHPGDM SPYSYDDLLG SGGGDGGAVA ASAGAAASTS 240 EGSSEELDGG AATWGSLWNL DDVVHDVMID CTAGAGCCWG SFPPLQDQGL AFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	7e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G24660.1