PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G24380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 701aa MW: 73362.2 Da PI: 6.8447

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G24380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.2	1.3e-10	301	357	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g OGLUM02G24380.1 301 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 357 57*****************5444.2455535555.7799999***********98 PP
2	AP2	49.7	9e-16	400	451	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OGLUM02G24380.1 400 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 451 89**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH 60 HSASYGIMEA FNRGAQEAQD WNMRGLDYNG GASELSMLVG SSGGKRAAAV EETEPKLEDF 120 LGGNSFVSEQ DRHAAVGGFL FSGVPMASST NSNSGSNTME LSMIKTWLRN NGQVPAGHQS 180 QQQQPVAAAA TAQQQAAHEA AEMSTDASAS SFGCSSDAMG RSNNGAVSAA AGGNSQSLAL 240 SMSTGSHSHL PIVVAGGAGG ATAESTSSEN KRASGAMDSP GGGAIEAVPR KSIDTFGQRT 300 SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGTTT 360 TTNFPISNYE KELDEMKHMT RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR 420 VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPVGGAA 480 RRLKEAADHA EAAGATIWRA ADMDGAGVIS GLADVGMGAY AASYHHHHHH GWPTIAFQQP 540 PPLAVHYPYG QAPAAPSRGW CKPEQDAAVA AAAHSLQDLQ QLHLGSAAAA AHNFFQASSS 600 STVYNGGGGG YQGLGGNAFL MPASTVVADQ GHSSTATNQG STCSYGNEEQ GKLIGYDAMA 660 MASGAAGGGY QLSQGSASTV SIARANGYSA NWSSPFNGAM G

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH  60
HSASYGIMEA FNRGAQEAQD WNMRGLDYNG GASELSMLVG SSGGKRAAAV EETEPKLEDF  120
LGGNSFVSEQ DRHAAVGGFL FSGVPMASST NSNSGSNTME LSMIKTWLRN NGQVPAGHQS  180
QQQQPVAAAA TAQQQAAHEA AEMSTDASAS SFGCSSDAMG RSNNGAVSAA AGGNSQSLAL  240
SMSTGSHSHL PIVVAGGAGG ATAESTSSEN KRASGAMDSP GGGAIEAVPR KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGTTT  360
TTNFPISNYE KELDEMKHMT RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPVGGAA  480
RRLKEAADHA EAAGATIWRA ADMDGAGVIS GLADVGMGAY AASYHHHHHH GWPTIAFQQP  540
PPLAVHYPYG QAPAAPSRGW CKPEQDAAVA AAAHSLQDLQ QLHLGSAAAA AHNFFQASSS  600
STVYNGGGGG YQGLGGNAFL MPASTVVADQ GHSSTATNQG STCSYGNEEQ GKLIGYDAMA  660
MASGAAGGGY QLSQGSASTV SIARANGYSA NWSSPFNGAM G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-120	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G24380.1