PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G22950.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 345aa    MW: 36002.7 Da    PI: 7.5896
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G22950.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1757107155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  OGLUM02G22950.1  57 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 107
                      68********.**********83....25999**********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MQAQHAMDEP ANAQLYGHAH AHSHHHRSKR PSPGGGGGGA ASLGADGGGG GGSLSGTRYR  60
GVRRRPWGRF AAEIRDPASK ERRWLGTFDT AEQAACAYDV AARAMRGTRA RTNFPVPAAA  120
GFPGGGGGGC WPWVNIPPQG AAAAASHQQP LNTFLLHNLL MSSSPHGCLL LHHAGHGHGH  180
AHSHSHSHSR AHNPSTRPPT SAPPPPPPAA ASSATTAPAT TTGAAVTSAP GADDDAWGFL  240
LRREPPEAGL LQDVLHGFYP TRRPHDDAGP APKLERPYEA TSSYRVSSPW GAVEDCDDGD  300
GDGDDDYRGF PMMPQGLLED VIQCPPYMEV LAAPSAAVGR VSRRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-12ERF family protein