PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G20880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 649aa MW: 71449.4 Da PI: 6.5527

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G20880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.5e-23	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++aee+ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + OGLUM02G20880.1 128 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RG 217 99**************************986555545..8********************************************..44 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++el+v+v+r OGLUM02G20880.1 218 ENGELRVGVRR 228 9999***97 PP
2	Auxin_resp	111.5	8.5e-37	254	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+++k+++a ++k+svGmRfkm+fe+++++err+sGt++gv ++++ W nS WrsLk OGLUM02G20880.1 254 ASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLK 336 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MAGSVVAAAA AGGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST 60 DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP 120 EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM 300 RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKPSPQ PPARNKRARP PASNSIAPEL 360 PPVFGLWKSS AESTQGFSFS GLQRTRELYP SSPNPIFSTS LNVGFSTKNE PSALSNKHFY 420 WPMRETRADS YSASISKVPS EKKQEPSSAG CRLFGIEISS AVEATSPLAA VSGVGQDQPA 480 ASVDAESDQL SQPSHANKSD APAASSEPSP HETQSRQVRS CTKVIMQGMA VGRAVDLTRL 540 HGYDDLCCKL EEMFDIQGEL SASLKKWKVV YTDDEDDMML VGDDPWPEFC SMVKRIYIYT 600 YEEAKQLTPK SKLPIIGDAI KPNPNKQSPE SDMPHSDLDS TAPVTDKDC

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MAGSVVAAAA AGGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST  60
DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP  120
EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM  300
RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKPSPQ PPARNKRARP PASNSIAPEL  360
PPVFGLWKSS AESTQGFSFS GLQRTRELYP SSPNPIFSTS LNVGFSTKNE PSALSNKHFY  420
WPMRETRADS YSASISKVPS EKKQEPSSAG CRLFGIEISS AVEATSPLAA VSGVGQDQPA  480
ASVDAESDQL SQPSHANKSD APAASSEPSP HETQSRQVRS CTKVIMQGMA VGRAVDLTRL  540
HGYDDLCCKL EEMFDIQGEL SASLKKWKVV YTDDEDDMML VGDDPWPEFC SMVKRIYIYT  600
YEEAKQLTPK SKLPIIGDAI KPNPNKQSPE SDMPHSDLDS TAPVTDKDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G20880.1