PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20200.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 319aa    MW: 33396.6 Da    PI: 12.196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20200.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18195244255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa ++++g
  OGLUM02G20200.1 195 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAELRFRG 244
                      7********.**********94....36************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MSCSPPSISN ARFLGSWTFG PPPPPPSRSV AAAATTLLVR GSHARRSKRG ISGGAGCGGG  60
GGARGQATAV GASGAAAEDA RGYDAAALSF PEEASRPRAA RGRVTYSRVV LAVDRSRTGM  120
ARKISVRRRR REHGVLVGSW TSTSAAAAVR DAPGRARLTP LLRGSHGCNG TGDHAGEASV  180
AAAGVVVAAP ATARRYRGVR RRPWGKWAAE IRDPRKAARV WLGTFRTAED AARAYDAAEL  240
RFRGRRAKLN FPEEASRPRR PWKGHDVDHM SCSPPSIANA RFLGSWIFGP PPPSRSVAAA  300
TTTLLGGSHG SNGADNGRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-18ERF family protein