PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G19730.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 381aa    MW: 41782.7 Da    PI: 4.5417
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G19730.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.4e-2756121171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  OGLUM02G19730.1  56 RYDSSLGLLTKKFINLLKQAPDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 121
                      6899******************************...99..****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MITSPGFTVS PMLTPVSGKA VKTSKSKTKN NKAGPQTPTS NVGSPLNPPT PVGTCRYDSS  60
LGLLTKKFIN LLKQAPDGIL DLNNAAETLE VQKRRIYDIT NVLEGIGLIE KTLKNRIRWK  120
GLDDSGVELD NGLSALQAEV ENLSLKEQAL DERISDMREK LRGLTEDENN QRWLYVTEDD  180
IKGLPCFQNE TLIAIKAPHG TTLEVPDPDE AGDYLQRRYR IVLRSTMGPI DVYLVSQFDE  240
KFEDLGGGAT PSGHANVPKH QPTEVFNTTN AGVGQCSNSV AVDNNIQHSQ TIPQDPSASH  300
DFGGMTRIIP SDIDTDADYW LISEGDISIT DMWKTAPDVQ WDEGLDTDVF LSEDVRTPSS  360
HNQQPSAVGG PQMQVSDMHK P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-121E2F/DP family protein