PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G13300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 327aa MW: 35757.4 Da PI: 7.1876 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 189 | 214 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ OGLUM02G13300.1 189 YQPDICKDYKETGYCGYGDSCKFMHD 214 67789********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence |
MADGGGGGGE AGSGGSAPVC SFVRKPPKNI RKRPTAPAGS DDDDEDGSGA IAAARAKKAP 60 SSTSKLFFSS ADGSSEPRRF QYESSRTIQA STDSRATATL ETETEFDRDA RAIRERQLKQ 120 AEESLKKNPS APASGSGSGS GEVYKGIHGY TDYKAGFRRE HTVSSEKAGG SHGPLRASAH 180 IRLSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQIEKEWEE AEKARKRRIA 240 MGGDGSDDEA GEEDDDDDEE ALPFACYICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC 300 FVCNKPTLGI FNAAQEIRKK MAQDKKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-120 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM02G13300.1 |