PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G11890.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 416aa MW: 46238.6 Da PI: 7.8944

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G11890.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	21	6.8e-07	47	70	17	41
TCR 17 YCeCfaagkkCseeCkCedCkNkee 41 YCeCfaa+++C+ C+C+ C Nk e OGLUM02G11890.3 47 YCECFAARVYCDG-CHCSPCGNKIE 70 ***********.******976 PP
2	TCR	50.8	3.3e-16	116	155	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e OGLUM02G11890.3 116 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 155 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPYCEC FAARVYCDGC 60 HCSPCGNKIE NENIRKEAIE TILLRNPLAF QPKIENSPNT VTVRKDNSEA IPPIPKHNKG 120 CHCRKSECLK KYCECFQANI LCSKNCRCQD CKNFEGSEER KALVQMKNAS DRNHIQEAAN 180 FALNGATGSL GYKSSPVRRK KYQENSLGEQ ILPEAQFQPL ASSCTGFGGD IASNYQSKSS 240 EMIYRSPLAN TIPLIEVNDL VKNALVACRK APEAFLTKAG NKVEMQAEKQ YQTNDEINND 300 KTKEQNLKEA SLKDIQNKAC IDRQNINGTE PHLANSFKDS RPASPGTQAL MCDEMDTTFG 360 NEDYRSPFVV PSRDQDISEL NADQERIVLT GLRDYLRVLI TRGNINGECN LLTLLL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPYCEC FAARVYCDGC  60
HCSPCGNKIE NENIRKEAIE TILLRNPLAF QPKIENSPNT VTVRKDNSEA IPPIPKHNKG  120
CHCRKSECLK KYCECFQANI LCSKNCRCQD CKNFEGSEER KALVQMKNAS DRNHIQEAAN  180
FALNGATGSL GYKSSPVRRK KYQENSLGEQ ILPEAQFQPL ASSCTGFGGD IASNYQSKSS  240
EMIYRSPLAN TIPLIEVNDL VKNALVACRK APEAFLTKAG NKVEMQAEKQ YQTNDEINND  300
KTKEQNLKEA SLKDIQNKAC IDRQNINGTE PHLANSFKDS RPASPGTQAL MCDEMDTTFG  360
NEDYRSPFVV PSRDQDISEL NADQERIVLT GLRDYLRVLI TRGNINGECN LLTLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-71	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G11890.3