PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G07430.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 378aa    MW: 40042.2 Da    PI: 8.3141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G07430.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.63.5e-7199375108374
             GRAS 108 geerv.HiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledlelee 193
                       ++rv Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+f++l    + +l++  + +
  OGLUM02G07430.1  99 AHRRVlHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFRFHPLilpCTAELAADPTAA 188
                      445555************************88888899*********....****************************554445666668899 PP

             GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklpres 279
                      L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a++yys++fd+lea++p++s
  OGLUM02G07430.1 189 LELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAAMDYYSSVFDALEATVPPAS 277
                      ********************8.5666666....*******************888655577788999*************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsv 370
                       +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ +++  +g+ +l W++rpL+sv
  OGLUM02G07430.1 278 ADRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKADDDggRGACFLRWQQRPLMSV 371
                      **************************************************************************996667788*********** PP

             GRAS 371 SaWr 374
                      S+W+
  OGLUM02G07430.1 372 SSWQ 375
                      ***6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MIRHVRMPPT LTPTTCSAHH QLAIEAAATT PRPPSSRSRS RSRHCRRARG AARRGGSCSR  60
APTSSTGGTS TGRAASPKPC SPPPTHAARL EAAADAGGAH RRVLHIVDLD AAHGVQWPPL  120
LQAIADRADP AVGPPPEVRL TGAGTDRDVL LRTGDRLRAF SSSLNLPFRF HPLILPCTAE  180
LAADPTAALE LHPDETLAVN CVLFLHKLGG DGELAAFLRW VKSMNPAVVT IAEREGVLGG  240
DVDDDNVPDE LPRRVAAAMD YYSSVFDALE ATVPPASADR LAVEQEILSR EIDAAVAAPG  300
AGGGGRARDF DAWASAARAA GLAPRPLSAF AASQARLLLR LHYPSEGYKA DDDGGRGACF  360
LRWQQRPLMS VSSWQPQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-53GRAS family protein