PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G07340.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 323aa    MW: 34826.7 Da    PI: 9.0105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G07340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06167186120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  nL+ H+
  OGLUM02G07340.1 167 FSCPVCRKTFNRYNNLQMHM 186
                      89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MEDYAQTNLI SRGHGHGHGH HHQPELMKEF PFISLISSTS SCISSSGQQQ QQQQDDDGHG  60
GHDRHQLLRY GCCSGNKQQE EEEEEVTVAL RIGLPAVSSA SASPSPAMAN HGASASSTGV  120
AGDDGGGGAM AGVGVEVESV RRSGGGGGGG QYWIPTAAQI LAGATQFSCP VCRKTFNRYN  180
NLQMHMWGHG SQYRRGGTAA LRGAQPTAML RLPCYCCAAG CRNHIDHPRA RPLKDFRTLQ  240
THYRRRHGAR DFACRRCAKR FAVRGDWRTH EKNCGRLWRC ACGAHFRHKR SLNDHARAFG  300
AAHAHAGAGA EDDGRAAAAG VLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-83C2H2 family protein