PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G04370.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 270aa    MW: 29448.5 Da    PI: 10.4004
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G04370.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly182.11e-56942312139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OGLUM02G04370.2  94 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 187
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OGLUM02G04370.2 188 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 231
                      *****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MAHSLMAVGP RRLDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRLSVGN  60
ATAAESQGQR CSASPASSPP PENTSGRKFA SYTVFKGKAA LSMQPILPSF SKLESGGSRV  120
NKNGSVMLTF FPAVGQRKYD YSKKQLFALS PTEVGSLISL GPAESCEFFH DPSMKSSHEG  180
QVKKSLSVTP LGNDSGYFLN ITVLNNLQKT TERLSLPISK AEFTVMRTAL SFALPHILGW  240
DQALTNHQPS PSPASKPRVE RPHPDSEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.18e-74Whirly family protein