PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G02260.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 543aa MW: 58803.9 Da PI: 6.0214

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G02260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.8e-31	118	171	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ OGLUM02G02260.1 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171 8****************************************************7 PP
2	Myb_DNA-binding	47.9	3.1e-15	119	170	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT++++ +v+av++lGg t+k++ ++m+ g++ ++ks++q+y+ OGLUM02G02260.1 119 RLRWTPDLHMAFVHAVERLGGQeraTPKLVLQMMNvRGLSIAHVKSHLQMYR 170 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MKEKEVLVEI VEDDELKRSI GRNQLDLNEE VMDVESEEGE VGDDEDDEDE EDDDDDDDGG 60 STTDVAGSRS SSNNSSTNNV SESKLKGDKD SGGGRLEGIN GGEQRVPSVR QYNRSKLPRL 120 RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHEGRQ 180 IRGAIASVFS PMDFHLMRGD LRFHDMLLQR AAALSSSRQE HGGFFSSRSG GGGGGLPPEA 240 SRLYGLLQHR QSPAMATMQT FDFKNSSFRN QEWSFSFNHQ RKETMNPSSS SSTTAAIRRW 300 PSAAGAVADV AGERQRLAER FGYYTGNGGA SSTSLPLITR AAMAAPPPMF AAAVAPPGRD 360 HHRLPFGWHA GGGGGGNKNR SSSDPVVIDE ALDSRRLEHQ QKHVEQPRTT LTTTTTPAGK 420 RPPEWSPPDL QLTLSPTTAP AAADGGGAKR SKTSTTTTNT TAAISGEQEA EKNMDRCKNK 480 LSISLSLSPP AAAAAAANFS SMDLSMEQQK QKQEKTTIGS SEEEAGDLGQ STLDLTMSIR 540 ALE

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MKEKEVLVEI VEDDELKRSI GRNQLDLNEE VMDVESEEGE VGDDEDDEDE EDDDDDDDGG  60
STTDVAGSRS SSNNSSTNNV SESKLKGDKD SGGGRLEGIN GGEQRVPSVR QYNRSKLPRL  120
RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHEGRQ  180
IRGAIASVFS PMDFHLMRGD LRFHDMLLQR AAALSSSRQE HGGFFSSRSG GGGGGLPPEA  240
SRLYGLLQHR QSPAMATMQT FDFKNSSFRN QEWSFSFNHQ RKETMNPSSS SSTTAAIRRW  300
PSAAGAVADV AGERQRLAER FGYYTGNGGA SSTSLPLITR AAMAAPPPMF AAAVAPPGRD  360
HHRLPFGWHA GGGGGGNKNR SSSDPVVIDE ALDSRRLEHQ QKHVEQPRTT LTTTTTPAGK  420
RPPEWSPPDL QLTLSPTTAP AAADGGGAKR SKTSTTTTNT TAAISGEQEA EKNMDRCKNK  480
LSISLSLSPP AAAAAAANFS SMDLSMEQQK QKQEKTTIGS SEEEAGDLGQ STLDLTMSIR  540
ALE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-34	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G02260.1