PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G00350.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 481aa MW: 53320.3 Da PI: 7.8921

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G00350.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.2	1.9e-27	50	99	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s OGLUM02G00350.2 50 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 99 8***********************************************86 PP
2	K-box	71.7	2.2e-24	117	212	4	99
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +s+ + e +++ +++ e+++L k+ie ++ + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + OGLUM02G00350.2 117 NSSAHEEGEESCKWRSEATNLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQ 210 3444467778889*******************************************************************************98 PP K-box 98 le 99 + OGLUM02G00350.2 211 CK 212 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MAAAAAGMGG GGGVQQQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT 60 FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA 120 HEEGEESCKW RSEATNLGKK IEAIEGYKSK LLGEGLGSCS VQELQELEVQ LEKSLCSIRQ 180 KKQKMLMDQI LELREKEMNL LKENMVLRDQ CKALSSPWST SVGELKNKQA DDDVHRHEDY 240 SGGGVRDDDD RRMMEDVETD LAAANQAGKV LKKGKKKQAK DELDRQKQAE KKRRRLEKAL 300 ANSAAIISEL EKKKQKKREE QQRLDEEGAA IAEAVALHVL IGEDSDEPCH LMLNKHRRCN 360 HWDHSAGFDF AVDAQGADIY PPDGLIQCAD HVYAPKGRCI DWGIGQPLPS LGEVKDLQLQ 420 APCYQGMFHQ SVACPGFIAA QAVSSLQIGG DSSDITSPSQ GATVVNRMLG ATNRLNLYRE 480 I

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MAAAAAGMGG GGGVQQQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT  60
FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA  120
HEEGEESCKW RSEATNLGKK IEAIEGYKSK LLGEGLGSCS VQELQELEVQ LEKSLCSIRQ  180
KKQKMLMDQI LELREKEMNL LKENMVLRDQ CKALSSPWST SVGELKNKQA DDDVHRHEDY  240
SGGGVRDDDD RRMMEDVETD LAAANQAGKV LKKGKKKQAK DELDRQKQAE KKRRRLEKAL  300
ANSAAIISEL EKKKQKKREE QQRLDEEGAA IAEAVALHVL IGEDSDEPCH LMLNKHRRCN  360
HWDHSAGFDF AVDAQGADIY PPDGLIQCAD HVYAPKGRCI DWGIGQPLPS LGEVKDLQLQ  420
APCYQGMFHQ SVACPGFIAA QAVSSLQIGG DSSDITSPSQ GATVVNRMLG ATNRLNLYRE  480
I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	317	KKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKK
2	275	295	KKKQAKDELDRQKQAEKKRRR
3	291	317	KKRRRLEKALANSAAIISELEKKKQKK
4	292	318	KKRRRLEKALANSAAIISELEKKKQKK
5	292	296	KRRRL
6	293	316	RRRLEKALANSAAIISELEKKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-47	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G00350.2