PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G49890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 406aa MW: 44700.5 Da PI: 4.6497

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G49890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.4e-31	160	216	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h OGLUM01G49890.1 160 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 216 8******************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MEGAMQESRE YWRDGGDVVG EELLREILDE TAAVHSNSNS NSNSNSKEAE EEEEDEREYF 60 AAAAADEQLQ VEAPCGRRRR ESMVNKLIST VYSGPTISDI ESALSFTAAG DHQLLADGHN 120 FAASSCSPVV FSPEKTLSKT MENKYTLKMK SCGNNGGLAD DGYKWRKYGQ KSIKNSPNPR 180 SYYRCTNPRC NAKKQVERAV DEPDTLIVTY EGLHLHYTYS HFLHSTSSSS SSTTTQQQLQ 240 PQPQMMTNCK KKPKLHLHPL LHDDPPPPPP EMTTMMIMQS FSIQQQQHDD DQLLQPAADH 300 LMVQAPPDGC YIDGSSSSGL MMSLDDDEQA AGAGGLLEDV VPLLVRRPPP PICNNNNYYY 360 SPATTCTSDN EYGSSASASP SSSVSVSSWT TPMSPCIDMA ILSNIF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MEGAMQESRE YWRDGGDVVG EELLREILDE TAAVHSNSNS NSNSNSKEAE EEEEDEREYF  60
AAAAADEQLQ VEAPCGRRRR ESMVNKLIST VYSGPTISDI ESALSFTAAG DHQLLADGHN  120
FAASSCSPVV FSPEKTLSKT MENKYTLKMK SCGNNGGLAD DGYKWRKYGQ KSIKNSPNPR  180
SYYRCTNPRC NAKKQVERAV DEPDTLIVTY EGLHLHYTYS HFLHSTSSSS SSTTTQQQLQ  240
PQPQMMTNCK KKPKLHLHPL LHDDPPPPPP EMTTMMIMQS FSIQQQQHDD DQLLQPAADH  300
LMVQAPPDGC YIDGSSSSGL MMSLDDDEQA AGAGGLLEDV VPLLVRRPPP PICNNNNYYY  360
SPATTCTSDN EYGSSASASP SSSVSVSSWT TPMSPCIDMA ILSNIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	6e-41	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G49890.1