PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G49640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 233aa MW: 23994 Da PI: 10.7618 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.5 | 1.4e-39 | 28 | 138 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s + OGLUM01G49640.1 28 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndlllp 120 789*************************************************************99999888755555555444444.358888 PP TCP 89 ...............kaaksaa 95 + ++ OGLUM01G49640.1 121 raapfilgkrlraadD----HT 138 7777777766533322....22 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MTTRPDGGGG APDKQLVPAS NANGTALAVR KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSPSSLRSNS TSNSNDLLLP 120 RAAPFILGKR LRAADDHTTS PAPAPDATAP TQAFWALPAR ADFGQLWSFA AAPEMMVAAA 180 AAPAMPGEAS AARVGNYLPM AQGNLNLLAS FSGGPGGAGA TAATGRPEEE SAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 7e-44 | TCP family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G49640.1 |