PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G45230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 482aa MW: 52709.2 Da PI: 7.0797 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32 | 1.6e-10 | 123 | 175 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50 k ien+ +r+ tf +Rr g+ K + +LC++e+++i +++ g++ +++ OGLUM01G45230.1 123 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICVAPAvagGEVTTWP 175 569*************************************9854448888887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence |
MVRTPTIIPL RPNYSPPGDG AAFRREPATY SRFPPAAARN ECDLTFGQER KREGMKGKPP 60 ISRKIIYNHR DFVSMGERFV ALCFIFTMSP LIDATLFVRV VLDFVRREET RRDEMPRTKL 120 VLKLIENEKK RKATFKNRRD GLKQKVSQFA TLCGVEALLI CVAPAVAGGE VTTWPPDRAA 180 VLDLIARLRA TPPEKIRQLH NTQSLLRDDL DKQQRLLLKV QKCGTDDVLT PWHCSLYDLS 240 LDGLNALHDT LSETLDRAHR RMAALGGGHG HVHDDAASSS AFSVPAPAPH AVALPDNAFD 300 FPFAPSNTGP VVGAHYFYPL HDTLPLPPPL PQQVPGQHPP CIAYQMPPPP CLAYQMPPPP 360 PSLAAAPFDQ CMSATGFMDS NPYATHIMHG GSTAAGLLDD HGQIFSAGAG YDDDDILGHG 420 FGFAAGTGYD LDPRMATADV WPMNTLNNIP NDGGIGFQLQ NDLKWMLPGG SNGSNLQGGF 480 QI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-12 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G45230.1 |