PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G44190.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 285aa    MW: 29706.6 Da    PI: 9.4229
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G44190.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.6e-4338136199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v++i+ lq++l+ql+++l
  OGLUM01G44190.3  38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDL 131
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      a++k 
  OGLUM01G44190.3 132 ARAKF 136
                      99875 PP

Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MASSSASSVP APSGSVITIA SASASAAANT AACGTGSPCA ACKFLRRKCQ PDCVFAPYFP  60
PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV YGCVAIISIL  120
QRNLRQLQQD LARAKFELSK YQQAAAAAAA ASASTGTNNG PHSMAEFIGN AVPNGAQSFI  180
NVGHSAALAS VGGAAACFGQ EQQFSAVHML SRSYEGEPIA RLGGNGGYEF GYSTSMAGGG  240
HMSGLGALGG APFLKSGIAG SDERQGAGQL LTRKLKFPKF WKLKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.35e-54LBD family protein