PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G42400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 173aa MW: 19278.5 Da PI: 9.0793 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.1e-08 | 15 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 r +W++ Ed+ + a + + + +W+++a+ ++ gRt+ + +++q + OGLUM01G42400.1 15 RRPWSKVEDKVFESALVMCPEDvpgRWALVAAQLP-GRTPQEALEHYQVL 63 679********************************.******99999976 PP | |||||||
2 | Myb_DNA-binding | 41.3 | 3.6e-13 | 106 | 150 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++++ ++G g+W+ I+r +Rt+ q+ s+ qky OGLUM01G42400.1 106 PWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 150 8*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MDLYGAAAGG GPVARRPWSK VEDKVFESAL VMCPEDVPGR WALVAAQLPG RTPQEALEHY 60 QVLVADIDLI MRGAVDAPGS WDDNDGNDRR GGGGKPRGEE RRRGVPWSED EHRLFLEGLD 120 RYGRGDWRNI SRFSVRTRTP TQVASHAQKY FIRQANAGAR DSKRKSIHDI TTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-43 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G42400.1 |