PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G41330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 413aa    MW: 44299.5 Da    PI: 6.6965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G41330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-18111156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + 
  OGLUM01G41330.1 111 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 156
                      79******************************.***********985 PP
2Myb_DNA-binding52.89.1e-17163207147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd ++  a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  OGLUM01G41330.1 163 RKPFTEEEDRIIMAAHAIHGNK-WAAIAKLLV-GRTDNAIKNHWNST 207
                      789*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MSSETAASPP PPPPNPPAAD SAHSSPASMT DETHGAGAHP DESQPHRSSS SSSSPPVAVD  60
GETRVPLPVR SLPQPSHPSP PPSGEDEDDV VITGQIAVGD AAGAAMEERV KGPWSSDEDT  120
LLSNLVEKLG PRNWTLIARG IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAI  180
HGNKWAAIAK LLVGRTDNAI KNHWNSTLRR RHCTGGRCTQ GGVMKRAIPE RPRSVSEEPW  240
PLGNLSSLNV REAMEAPAQT VSESYVGAWQ IGDQSCKTEV VDPPYLARPV AKVGAFKPYN  300
VGPAQSSQKE MLSFATKFDS NLHPFKPENG VCKFVDPTSF AAEVPNKCGH GCCSSHGQLR  360
KNSLLGPEFN EFEDHPPISD SSFASLVSEI SSIAWMKSGL QSSDTLARSV PPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-78MYB family protein