PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G39690.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 251aa MW: 26493 Da PI: 6.9406

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G39690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael OGLUM01G39690.1 59 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAEL 152 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e OGLUM01G39690.1 153 EAVRAE 158 *99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MSTERERLDE IGKKIKREPD TAGVVVAAVA GTGTGTATPI EHRVPHRLGL GGAVNTVTPC 60 AACKLLRRRC AQECPFAPYF SPHEPHKFAA VHKVFGASNV SKMLLEVGEA ERADAASSLV 120 YEANLRLRDP VYGCMGAISM LQQQVNALEA ELEAVRAEIF KRRYRQAGAA TGLMDDVQVH 180 ITAGFAAPPP PPSMHARDVV SVADAGGQGQ ELAGAPVISS ASPPVYPAGQ PSTSTTDYSS 240 LNTSEHAAYF G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-65	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G39690.1