PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G38820.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 429aa MW: 46607.1 Da PI: 8.8801

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G38820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.4	4.8e-10	77	134	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV +++ +g+++A+++d +n rkr + g ++t+e Aa+ ++ a++k++g OGLUM01G38820.1 77 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 134 57*****************555533445599999*****************987 PP
2	AP2	50.5	5.1e-16	177	228	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++ +grW+A+I + g +k+ +lg+f+t eeAa a++ a+ +l+g OGLUM01G38820.1 177 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 228 89**************99966...2.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MVSMRKKKKA FAVAAATTLL SPPRSSSSSS STASSCIVPP RTESGKKKSK HRKRAKDGTG 60 GDDDAAAVAA APRKGSSIYK GVARHRGSGK YEAHLWDKQG WNPNQTRKRG RQGAYDTEEA 120 AARTYDLAAL KIWGSDHVLN FPIDTYRKEL ERMQRMTREE YLATLRRKSS GFSRGVSKYR 180 GVAKHHHNGR WEARIGRAVG KKYLYLGTFD TQEEAATAYD LAAIQLRGRS AVTNFDASCY 240 TYTDHLPPPP PPPPPQPPSV CKTEPELEPP QPAAPPGSES LLRPKMEPCD DWEPPAICPS 300 LRDADDADHA IAEILPALCM DRADFEARYP ARRARDAAAD GWSTSSDDVA AASVDDDVLR 360 SLPDDVGFVD DVESLFLDAP GPAAAAAAAA MPDDVERAVQ RAPSAASRRA NAAAVSYAIN 420 SLASGRWWY

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MVSMRKKKKA FAVAAATTLL SPPRSSSSSS STASSCIVPP RTESGKKKSK HRKRAKDGTG  60
GDDDAAAVAA APRKGSSIYK GVARHRGSGK YEAHLWDKQG WNPNQTRKRG RQGAYDTEEA  120
AARTYDLAAL KIWGSDHVLN FPIDTYRKEL ERMQRMTREE YLATLRRKSS GFSRGVSKYR  180
GVAKHHHNGR WEARIGRAVG KKYLYLGTFD TQEEAATAYD LAAIQLRGRS AVTNFDASCY  240
TYTDHLPPPP PPPPPQPPSV CKTEPELEPP QPAAPPGSES LLRPKMEPCD DWEPPAICPS  300
LRDADDADHA IAEILPALCM DRADFEARYP ARRARDAAAD GWSTSSDDVA AASVDDDVLR  360
SLPDDVGFVD DVESLFLDAP GPAAAAAAAA MPDDVERAVQ RAPSAASRRA NAAAVSYAIN  420
SLASGRWWY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-75	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G38820.1