PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G37170.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 415aa    MW: 45155 Da    PI: 10.5032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G37170.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014337357223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ Cgk F  + +L++H++++
  OGLUM01G37170.1 337 RCSQCGKEF-KPQELHSHMQSC 357
                      6********.*********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    
MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL  60
RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS  120
SLAEEPKKLN GQEVKVACDQ KQVEEVTTTM APDSDERSPK KPPPADQDSP VGEGGEPASR  180
STAPLKKDLP RGLREERKKQ QREVVKVVSK AVVVPAPAPE QKVKGAASGR ISSHPPPAVG  240
SARRMHLAQL LHNLLTCGAA DADDTALRPV LRHGAAGADD DGGDWPRTPV CPGIDGCGLR  300
VGKKVKVRRG GKDKAKPKRD GGKRDGGDSH KPASLPRCSQ CGKEFKPQEL HSHMQSCRVF  360
REKMRSSTSS RVSVDRGRTS AAARTEHRRT RSKGAAAAPG DTSDRPSAVL LLRDS