PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G36730.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 617aa MW: 65647.3 Da PI: 7.6145

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G36730.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.6	1.9e-33	372	487	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg OGLUM01G36730.2 372 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 465 7*******************************998555559*********************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ l+ +l++l+++ OGLUM01G36730.2 466 TILALQHQVSLLQGQLSVLESQ 487 **************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MRNSATPGAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI 60 PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG 120 CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPLCGN RRTQLGVTVR 180 LRVVRHREKG WGLHAAEVLR RRQFVCEYAG ELLTTEEARR RQGLYDELAS VEISSKEKSS 240 PSVMVMLDLG RMACRAFALG MHSPLQESGG DEDESFDKED SWREWRTQQK NNLVPLQSFI 300 QSTLPFPLSL AFVSSVQQPQ LMPMPPLPMP HVPFALALQP PGSSKRRGAV ERPASGAGLQ 360 AEEASSAGPG APCGACKFLR RRCVPGCVFA PHFSGCGGSG VGAGVGGRGR ERGAAEFAAV 420 HRVFGASNVA KLLSRVPAAL RRDAARTVCY EAQARIADPV YGSVGTILAL QHQVSLLQGQ 480 LSVLESQLFN LRVALASAHP DTPPQHFVVL QPAHSAASTP NQVVVNYDDL PHAVDFMDAE 540 PAALRGLESL QLSQPLQREE DEGHRDMNLF SDSVGQRQLG FGSHTIKVLE VLIDEISWAQ 600 SKSSAGDQRK ALLRREG

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MRNSATPGAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI  60
PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG  120
CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPLCGN RRTQLGVTVR  180
LRVVRHREKG WGLHAAEVLR RRQFVCEYAG ELLTTEEARR RQGLYDELAS VEISSKEKSS  240
PSVMVMLDLG RMACRAFALG MHSPLQESGG DEDESFDKED SWREWRTQQK NNLVPLQSFI  300
QSTLPFPLSL AFVSSVQQPQ LMPMPPLPMP HVPFALALQP PGSSKRRGAV ERPASGAGLQ  360
AEEASSAGPG APCGACKFLR RRCVPGCVFA PHFSGCGGSG VGAGVGGRGR ERGAAEFAAV  420
HRVFGASNVA KLLSRVPAAL RRDAARTVCY EAQARIADPV YGSVGTILAL QHQVSLLQGQ  480
LSVLESQLFN LRVALASAHP DTPPQHFVVL QPAHSAASTP NQVVVNYDDL PHAVDFMDAE  540
PAALRGLESL QLSQPLQREE DEGHRDMNLF SDSVGQRQLG FGSHTIKVLE VLIDEISWAQ  600
SKSSAGDQRK ALLRREG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	5e-22	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G36730.2